Widespread and frequent horizontal transfers of transposable elements in plants.
Identifieur interne : 001F63 ( Main/Exploration ); précédent : 001F62; suivant : 001F64Widespread and frequent horizontal transfers of transposable elements in plants.
Auteurs : Moaine El Baidouri [France] ; Marie-Christine Carpentier ; Richard Cooke ; Dongying Gao ; Eric Lasserre ; Christel Llauro ; Marie Mirouze ; Nathalie Picault ; Scott A. Jackson ; Olivier PanaudSource :
- Genome research [ 1549-5469 ] ; 2014.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : DNA Transposable Elements, Retroelements.
- genetics : Magnoliopsida.
- Gene Transfer, Horizontal, Genome, Plant, Species Specificity.
Abstract
Vertical, transgenerational transmission of genetic material occurs through reproduction of living organisms. In addition to vertical inheritance, horizontal gene transfer between reproductively isolated species has recently been shown to be an important, if not dominant, mechanism in the evolution of prokaryotic genomes. In contrast, only a few horizontal transfer (HT) events have been characterized so far in eukaryotes and mainly concern transposable elements (TEs). Whether these are frequent and have a significant impact on genome evolution remains largely unknown. We performed a computational search for highly conserved LTR retrotransposons among 40 sequenced eukaryotic genomes representing the major plant families. We found that 26 genomes (65%) harbor at least one case of horizontal TE transfer (HTT). These transfers concern species as distantly related as palm and grapevine, tomato and bean, or poplar and peach. In total, we identified 32 cases of HTTs, which could translate into more than 2 million among the 13,551 monocot and dicot genera. Moreover, we show that these TEs have remained functional after their transfer, occasionally causing a transpositional burst. This suggests that plants can frequently exchange genetic material through horizontal transfers and that this mechanism may be important in TE-driven genome evolution.
DOI: 10.1101/gr.164400.113
PubMed: 24518071
PubMed Central: PMC4009612
Affiliations:
Links toward previous steps (curation, corpus...)
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Jackson</name></author><author><name sortKey="Panaud, Olivier" sort="Panaud, Olivier" uniqKey="Panaud O" first="Olivier" last="Panaud">Olivier Panaud</name></author></analytic><series><title level="j">Genome research</title><idno type="eISSN">1549-5469</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>DNA Transposable Elements (genetics)</term><term>Gene Transfer, Horizontal (MeSH)</term><term>Genome, Plant (MeSH)</term><term>Magnoliopsida (genetics)</term><term>Retroelements (genetics)</term><term>Species Specificity (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Génome végétal (MeSH)</term><term>Magnoliopsida (génétique)</term><term>Rétroéléments (génétique)</term><term>Spécificité d'espèce (MeSH)</term><term>Transfert horizontal de gène (MeSH)</term><term>Éléments transposables d'ADN (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA Transposable Elements</term><term>Retroelements</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Magnoliopsida</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Magnoliopsida</term><term>Rétroéléments</term><term>Éléments transposables d'ADN</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Transfer, Horizontal</term><term>Genome, Plant</term><term>Species Specificity</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Génome végétal</term><term>Spécificité d'espèce</term><term>Transfert horizontal de gène</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Vertical, transgenerational transmission of genetic material occurs through reproduction of living organisms. In addition to vertical inheritance, horizontal gene transfer between reproductively isolated species has recently been shown to be an important, if not dominant, mechanism in the evolution of prokaryotic genomes. In contrast, only a few horizontal transfer (HT) events have been characterized so far in eukaryotes and mainly concern transposable elements (TEs). Whether these are frequent and have a significant impact on genome evolution remains largely unknown. We performed a computational search for highly conserved LTR retrotransposons among 40 sequenced eukaryotic genomes representing the major plant families. We found that 26 genomes (65%) harbor at least one case of horizontal TE transfer (HTT). These transfers concern species as distantly related as palm and grapevine, tomato and bean, or poplar and peach. In total, we identified 32 cases of HTTs, which could translate into more than 2 million among the 13,551 monocot and dicot genera. Moreover, we show that these TEs have remained functional after their transfer, occasionally causing a transpositional burst. This suggests that plants can frequently exchange genetic material through horizontal transfers and that this mechanism may be important in TE-driven genome evolution. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24518071</PMID><DateCompleted><Year>2014</Year><Month>12</Month><Day>28</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1549-5469</ISSN><JournalIssue CitedMedium="Internet"><Volume>24</Volume><Issue>5</Issue><PubDate><Year>2014</Year><Month>May</Month></PubDate></JournalIssue><Title>Genome research</Title><ISOAbbreviation>Genome Res</ISOAbbreviation></Journal><ArticleTitle>Widespread and frequent horizontal transfers of transposable elements in plants.</ArticleTitle><Pagination><MedlinePgn>831-8</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1101/gr.164400.113</ELocationID><Abstract><AbstractText>Vertical, transgenerational transmission of genetic material occurs through reproduction of living organisms. In addition to vertical inheritance, horizontal gene transfer between reproductively isolated species has recently been shown to be an important, if not dominant, mechanism in the evolution of prokaryotic genomes. In contrast, only a few horizontal transfer (HT) events have been characterized so far in eukaryotes and mainly concern transposable elements (TEs). Whether these are frequent and have a significant impact on genome evolution remains largely unknown. We performed a computational search for highly conserved LTR retrotransposons among 40 sequenced eukaryotic genomes representing the major plant families. We found that 26 genomes (65%) harbor at least one case of horizontal TE transfer (HTT). These transfers concern species as distantly related as palm and grapevine, tomato and bean, or poplar and peach. In total, we identified 32 cases of HTTs, which could translate into more than 2 million among the 13,551 monocot and dicot genera. Moreover, we show that these TEs have remained functional after their transfer, occasionally causing a transpositional burst. This suggests that plants can frequently exchange genetic material through horizontal transfers and that this mechanism may be important in TE-driven genome evolution. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>El Baidouri</LastName><ForeName>Moaine</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Université de Perpignan Via Domitia, Laboratoire Génome et Développement des Plantes, UMR5096 CNRS/UPVD, 66860 Perpignan Cedex, France;</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Carpentier</LastName><ForeName>Marie-Christine</ForeName><Initials>MC</Initials></Author><Author ValidYN="Y"><LastName>Cooke</LastName><ForeName>Richard</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Gao</LastName><ForeName>Dongying</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Lasserre</LastName><ForeName>Eric</ForeName><Initials>E</Initials></Author><Author ValidYN="Y"><LastName>Llauro</LastName><ForeName>Christel</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Mirouze</LastName><ForeName>Marie</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Picault</LastName><ForeName>Nathalie</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Jackson</LastName><ForeName>Scott A</ForeName><Initials>SA</Initials></Author><Author ValidYN="Y"><LastName>Panaud</LastName><ForeName>Olivier</ForeName><Initials>O</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>02</Month><Day>11</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Genome 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Perpignan</li></orgName></list><tree><noCountry><name sortKey="Carpentier, Marie Christine" sort="Carpentier, Marie Christine" uniqKey="Carpentier M" first="Marie-Christine" last="Carpentier">Marie-Christine Carpentier</name><name sortKey="Cooke, Richard" sort="Cooke, Richard" uniqKey="Cooke R" first="Richard" last="Cooke">Richard Cooke</name><name sortKey="Gao, Dongying" sort="Gao, Dongying" uniqKey="Gao D" first="Dongying" last="Gao">Dongying Gao</name><name sortKey="Jackson, Scott A" sort="Jackson, Scott A" uniqKey="Jackson S" first="Scott A" last="Jackson">Scott A. Jackson</name><name sortKey="Lasserre, Eric" sort="Lasserre, Eric" uniqKey="Lasserre E" first="Eric" last="Lasserre">Eric Lasserre</name><name sortKey="Llauro, Christel" sort="Llauro, Christel" uniqKey="Llauro C" first="Christel" last="Llauro">Christel Llauro</name><name sortKey="Mirouze, Marie" sort="Mirouze, Marie" uniqKey="Mirouze M" first="Marie" last="Mirouze">Marie Mirouze</name><name sortKey="Panaud, Olivier" sort="Panaud, Olivier" uniqKey="Panaud O" first="Olivier" last="Panaud">Olivier Panaud</name><name sortKey="Picault, Nathalie" sort="Picault, Nathalie" uniqKey="Picault N" first="Nathalie" last="Picault">Nathalie Picault</name></noCountry><country name="France"><region name="Occitanie (région administrative)"><name sortKey="El Baidouri, Moaine" sort="El Baidouri, Moaine" uniqKey="El Baidouri M" first="Moaine" last="El Baidouri">Moaine El Baidouri</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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